PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g030760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 735aa    MW: 80974.2 Da    PI: 5.3815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g030760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.12.1e-20586682295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ l +ed  ++r+W++++++  ++ks++y+l+ ++ +Fvk+ngL+egDf+v++  ++ +++
  Csa01g030760.1 586 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISLAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVKSNGLQEGDFIVIY--SDvKCG 677
                     79*************************999999********7778*******99777777777777.********************..555999 PP

                     ..EEE CS
              B3  91 elvvk 95 
                     +++++
  Csa01g030760.1 678 KYLIR 682
                     88776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-28580692IPR015300DNA-binding pseudobarrel domain
CDDcd100157.62E-38583684No hitNo description
SuperFamilySSF1019362.35E-22584678IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.715585687IPR003340B3 DNA binding domain
SMARTSM010193.2E-19585687IPR003340B3 DNA binding domain
PfamPF023622.3E-16586681IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MKSLHVAANG GDLAEDCGIL AGDADEDILI VGMDDVGREI WIDDHGGDHN HHHAHGDDDL  60
IVHHDPSLFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS SASSSSAASS STSSAASWAI  120
LRSDGEDPAP NQNQYGSGKC DESSGALQST ASMEIPLDTS QGFGCGEGGG DCIDMMETFG  180
YMDLLDSNEF FDTSAIFSQD DDTQNPNLMD QTLERQQDQV VVPMLENNSG GDMQMMNSSL  240
EQDDDLATVF LEWLKNNKDT VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW  300
VQTNHLQRRR TTTTTTITTT NNNNISYQQS FQQDPFQNPN PNNNNLIPPS DQTCFSPSTW  360
VPTPQPQQAF VSDPGFGYMP APSYPPPPPE YLPILESPPS WPPPPPQSGP MPHQQFPMPP  420
NPQYNQFGEP TGFTGYNMNP YQYPYIPPGQ MRDQRLLRLC SSATKEARKK RMARQRRFLS  480
HHHRHNNNNN NNSTNQQNQN QVGETCAAVA PQLNPVATNA TGGTWMYWPN VPSVPPQLPP  540
PMETQLPMMD RAGSASAMPR QQVVPVPVPD RRQGWKPEKN LRFLLQKVLK QSDVGNLGRI  600
VLPKKEAETH LPELEARDGI SLAMEDIGTS RVWNMRYRFW PNNKSRMYLL ENTGDFVKSN  660
GLQEGDFIVI YSDVKCGKYL IRGVKVRQPT GQKQEAPPSS AATTKRQNKS QRNINNNSPS  720
ASVVVASPAS QTVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2207390.0AK220739.1 Arabidopsis thaliana mRNA for abscisic acid-insensitive protein 3, complete cds, clone: RAFL22-12-F22.
GenBankX681410.0X68141.1 A.thaliana mRNA for ABI3 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513655.10.0PREDICTED: B3 domain-containing transcription factor ABI3
SwissprotQ015930.0ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLD7L5710.0D7L571_ARALL; Putative uncharacterized protein
STRINGAT3G24650.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.10.0B3 family protein